rs50463117 SNP Detail

Summary

• ID
  rs50463117
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170785618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATGATAA TAATAATGAT
  GATGATGTGA TGATGATGAT GATGATGATG TGTATGCTAC TGAGGTGGGA AGAAAGAAAT
  GAAATAAGGC AACGGAAGAG GACTGGACAT GGGTGTAGAC CTGTGTGTGG GAGTTGATAA
  TGATATTTGA ACCATTTCCA ATCATTTGCT CAAGGAATAA CCTTGGAATA CCTAGCCTCA
  R
  GACAGGAAAA AATTGTCAGG TACTCACCTT ACACCAAATT CAAAACGGAC TCCCAAGTCT
  ATTTAAGTTC AAATCTTTTC CAATGCATGT AAGAATTTTA GATAAATTTG CTAAGGTTTC
  AAGGAAAGAT AGGTTTTCAC TGACCTCTTG AGATTCAGAA AGTCCTTTTC AGGTTGCTAT
  GACAATCCCT CAGGGACTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60345300	NES15845178	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50463117					SNP	A	A	A	A	G	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60345300	NES15845178	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170785618 () rs orientation: forward

Symbol	Name	Function Class
Fcgr2b	Fc receptor, IgG, low affinity IIb	568 bp downstream
Gm70986	predicted gene, 70986	within coordinates
Rr20517	regulatory region 20517	783 bp proximal
Rr20518	regulatory region 20518	1383 bp proximal
Rr20519	regulatory region 20519	1782 bp proximal
Tssr284	transcription start site region 284	1845 bp downstream
Tssr14949	transcription start site region 14949	846 bp downstream
Tssr14950	transcription start site region 14950	1690 bp downstream
Tssr14951	transcription start site region 14951	1768 bp downstream