rs50463759 SNP Detail

Summary

• ID
  rs50463759
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178232861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A ATTATCATTA AAGATTAAAA CTAGATATTA ATTTGAGTCA
  CATTGTTAGA CATTTCAAAA CTGTTGGGTT TTTTTTGTTT GTTTGTTTGT TTGTTTGTTT
  K
  GGGGGGGTTT CATTTAAGGG AGAATCTTAG TATTCTGAGC TTATCCATCA AATAACAAAA
  CACGCGATAG CCAAGTTTCT CAGTACTCAA AATTCTCATC G                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146355572	ENSMUSSNP3403196	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50463759					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178232861 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1092	CpG island 1092	331 bp proximal
Efcab2	EF-hand calcium binding domain 2	789 bp upstream
Gm70920	predicted gene, 70920	614 bp downstream
Gm70923	predicted gene, 70923	1193 bp upstream
Rr29069	regulatory region 29069	within coordinates
Rr372517	regulatory region 372517	within coordinates
Tssr10392	transcription start site region 10392	721 bp upstream
Tssr10393	transcription start site region 10393	735 bp upstream
Tssr10394	transcription start site region 10394	742 bp upstream
Tssr10395	transcription start site region 10395	756 bp upstream
Tssr10396	transcription start site region 10396	776 bp upstream
Tssr10397	transcription start site region 10397	1199 bp upstream
Tssr15493	transcription start site region 15493	1119 bp downstream