rs50464139 SNP Detail

Summary

• ID
  rs50464139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17103061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCC TGGACCCAGA AAGCCAAGAC
  Y
  GAAAGGGTAA GCAAAACACT AGATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146100404	ENSMUSSNP6432110	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss325726632	CHEV_19_17200187	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50464139					SNP	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17103061 () rs orientation: forward

Symbol	Name	Function Class
Prune2	prune homolog 2	within coordinates
Rr544799	regulatory region 544799	1118 bp distal
Tssr155419	transcription start site region 155419	27 bp downstream
Tssr158489	transcription start site region 158489	218 bp upstream
Tssr158490	transcription start site region 158490	155 bp upstream
Tssr158491	transcription start site region 158491	99 bp upstream