rs50464445 SNP Detail

Summary

• ID
  rs50464445
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39402119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTAT TTCTAAAGAG AAGATTTTAT
  R
  TAATTATAAG AGGAAGTGTA GTGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148967744	ENSMUSSNP3291067	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss319695452	CHEV_1_39419883	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50464445					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39402119 () rs orientation: forward

Symbol	Name	Function Class
Cpgi184	CpG island 184	911 bp distal
Gm53549	predicted gene, 53549	within coordinates
Npas2	neuronal PAS domain protein 2	within coordinates
Rr16114	regulatory region 16114	519 bp distal
Tssr6374	transcription start site region 6374	41 bp downstream