rs50465111 SNP Detail

Summary

• ID
  rs50465111
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:62141230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGAAAGT GCCTCCCTTT
  TCTACCCCTC CCATGAAAAG TTGGTTTTTT TTTTTTTTTT TTTTTTTTTT TTGAAAATTA
  TCTAAGCCTG TTATAGAAAC TTAGGATGGA AATACCCCAG CTAACTGCCG TTCTTTTGAC
  TTCTGTTAAA ATGCTTCCTT GCCTTACTTC CCCTCCAACA ACAACCAAGA TGTAGTTTTT
  Y
  TGTGTTCTTT GCCTTTACAA GCTCTGTGTA TGGGCTGGAG AGATAGCTCA GCTATTGAAG
  GCTAGGCTCG CAACTAAAAA TATAAAATCT CCATGAAAAT GCATTAAAGG CTGCTCTCTG
  AGAAGTATTT CTCACCAGGC AGTCTCTGTT AGGCTTAATA CAAACTCTCA GTCCATACTT
  TGCTCATGCT GGATGTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60476150	NES16455392	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50465111					SNP	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60476150	NES16455392	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:62141230 () rs orientation: forward

Symbol	Name	Function Class
Rr318921	regulatory region 318921	1971 bp proximal