rs50465861 SNP Detail

Summary

• ID
  rs50465861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13839126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATTAGAGAG AAAGCAGTGA TTGATGTATA GAAAGGTAGT
  GAACGTTGTC CCAGTTGACA TTCCATAGTT ATTGGTGGTT TGCCTGCCTT AAAGGAGAAC
  Y
  ATGGTTCAGT TCTTGGGCCA GGAATTCCGG AGGCTAACTT CTGCCCTTCC CACAGGGTCA
  CCTGTTAGCT GGTATTAGCA TTGATACATG TTTTCAACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146837570	ENSMUSSNP4892654	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50465861					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13839126 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1318	CpG island 1318	1161 bp proximal
Gm56954	predicted gene, 56954	686 bp downstream
Gm66890	predicted gene, 66890	1238 bp upstream
Rr384171	regulatory region 384171	682 bp upstream
Rr427854	regulatory region 427854	748 bp proximal
Rr427855	regulatory region 427855	1249 bp proximal
Tssr92402	transcription start site region 92402	1244 bp upstream
Tssr92403	transcription start site region 92403	1414 bp upstream
Tssr92404	transcription start site region 92404	1445 bp upstream
Tssr92405	transcription start site region 92405	1467 bp upstream
Tssr92406	transcription start site region 92406	1632 bp upstream
Tssr92407	transcription start site region 92407	1857 bp upstream
Tssr92408	transcription start site region 92408	1876 bp upstream
Tssr92409	transcription start site region 92409	1908 bp upstream
Tssr92410	transcription start site region 92410	1946 bp upstream