rs50466026 SNP Detail

Summary

• ID
  rs50466026
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:74789646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATAACTG AGCACTGTGT
  GGCAGGCATG GACTGATGCT TTTGAAAGCT TAGAGCAGAC TGGAGAAAGA AAAAAAAAAG
  GATTCCAAAG TAGAATTTTT AATCAAAAGA AGAGAAGTGT AAAAATGTAC AAAATTCTCC
  ACCTACTCAT TAAAGAAATG GGAAAAGTTG CTCAGGGAGA GCAAAAGTGT GGAGCCCGAT
  K
  GTCTTGCTAC AGTCAGGAAC CATCCATTCC CAAGAAGGAA GAATGATCAC AAAAGTATCG
  GCAAGATCAC CCAACAGCCC CTCTGTCACA GGCCTGCAGT TTCCGGGGGC CTTAGAGACA
  AATTTATTTC AGGTGTTGGG GAGGGAAGGG AACAGGGGTG CTGTCGCTTG CTCAATCCCA
  TATCACACAG CTAGCTTCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52570516	NES15642372	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50466026					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52570516	NES15642372	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74789646 () rs orientation: forward

Symbol	Name	Function Class
Gm62792	predicted gene, 62792	within coordinates
Tssr131597	transcription start site region 131597	908 bp upstream
Tssr131598	transcription start site region 131598	956 bp upstream