rs50467230 SNP Detail

Summary

• ID
  rs50467230
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:60384988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATAAAAA ACGTATTTAT
  GGGGAAACTA TCAAAAGTTG GGCAACTTGC AGGTTCTCTA GTGTCTCTCA ATGATCCTGA
  GAACATGCTC CCATTTTATA GATTGGTTGA CAGATTTTGA AGAAGGCTCA TAGTTTCCCC
  AAGATTTCAT GGCCAGTATC TGGAACTTGG ACCCTTCCAA GGCCTAGAGT TAAATGATCA
  W
  GAACTGACTA CTGAACATCT ATTACAGTAC ACAGTACTGC CAGTACACAG TGAAAGGACT
  CTCCAATTCT TCCCTTAAGG CAATGAAAGG TGTCAAGTTC AATCTAAATA CTTTTGAGAA
  GATTTTTTTA AAAAATGACC ATAAATTCAA ACATGCTACA AGCATCTTAG AGAAAGAAAA
  GTTCTCCATC TTGATCATCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52501563	NES15579410	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50467230					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52501563	NES15579410	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:60384988 () rs orientation: forward

Symbol	Name	Function Class
Rr389731	regulatory region 389731	1674 bp downstream
Rr389732	regulatory region 389732	1034 bp upstream