rs50467884 SNP Detail

Summary

• ID
  rs50467884
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:55131717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTACCAGA CAGTTCAGCT
  ACCTTCTCCT TCCTCAATTA GGCAACTGCA GGAGAAAGAC AAAGAGACTC AGCGCCCTCC
  CAACTCTTTG GGATCCTGAA TGAGAAGAGA TTAGAGTTTA GACAGCTGGC CATTGTCATG
  CACATCTAAG CAGTAACAGT GGATGCATAG CCCCGCCCAC CCAGAATAGT CTGGGCTTCA
  S
  TGTCGTCCTG TAAGCTATGG GAAATCTTTG GGGAGGGAGA CAAATTCTCA CGTCTGGCTC
  CCCTGGAGCT GTTTCCTCCT TCCAGTATGA GATTCCTAGG GTGATTTCTA TTTCTTGGGG
  ATCTATGGTT TGAATAGCCT AACTGACACA TTGAGAGACC TAAGAGTCTC TTTAAAACAT
  ATTTATTTTT TCTAGCCTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63515131	NES17007363	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50467884					SNP	C	C	C	C	C	C	G	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63515131	NES17007363	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:55131717 () rs orientation: forward

Symbol	Name	Function Class
D15Mit26	DNA segment, Chr 15, Massachusetts Institute of Technology 26	234 bp proximal
D15Mit26.1	DNA segment, Chr 15, Massachusetts Institute of Technology 26.1	323 bp proximal
Rr303058	regulatory region 303058	917 bp distal
Rr303059	regulatory region 303059	284 bp proximal