rs50468963 SNP Detail

Summary

• ID
  rs50468963
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84569076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGCTT GTCTCAAATA
  ACCAACAGCA ACTATGATGG TTGACATTAC ATTTAAAGTT TATATTTACT ATGCTTGAGA
  GACCAAAAAA AGAAAAAAAA TGCCTCTAAC ATGCAAGGCC TTAGCTTGTA CAGGCTCTAC
  CCTACAAGCC CACTTCTCCC AGACATTAAA GATTAATCTT AAAGAGACTG GTCGTATAAA
  R
  TTTGCTGTTC TAGCAAGTAG TAGGTCAACT TCAATTTCTG CCTTCGTAAT CAAACTTGAT
  TACTCTGCTC AAAAAATATG ACTAGGACCA ATACAAAACA TATATGTTAA ATTAGACGCT
  GCCTATAGGT ATAATCGTGT GGGGTTTGCC TTTGTATGCC TTAGGCTGCT TTGTCTAGAG
  GCTGTGTCTT GGGATCACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	KK/HlJ	LG/J	SM/J	WSB/EiJ
ss60499945	NES16521733	PERLEGEN	MM_PANEL2	f	SNP	G	G	A			A
ss325261866	CHEV_16_84772433	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	KK/HlJ	LG/J	SM/J	WSB/EiJ
rs50468963					SNP	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60499945	NES16521733	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84569076 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	1738 bp proximal
Jam2	junction adhesion molecule 2	1935 bp upstream
Rr392067	regulatory region 392067	1620 bp downstream
Tssr139177	transcription start site region 139177	815 bp upstream
Tssr139178	transcription start site region 139178	1464 bp upstream
Tssr139179	transcription start site region 139179	1667 bp upstream
Tssr139180	transcription start site region 139180	1702 bp upstream
Tssr139181	transcription start site region 139181	1898 bp upstream
Tssr139182	transcription start site region 139182	1948 bp upstream
Tssr139183	transcription start site region 139183	1975 bp upstream
Tssr139184	transcription start site region 139184	1987 bp upstream
Tssr141866	transcription start site region 141866	397 bp downstream