rs50469250 SNP Detail

Summary

• ID
  rs50469250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:67598657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACT CTGACCCTGG AACCTAGCAA
  Y
  TTCTGTCACC TCAAAGCAAG ACAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss61833644	NES17763591	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C		T	C	T
ss149266908	ENSMUSSNP556780	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					C
ss324392134	CHEV_13_67551474	CHEVERUD	SCREENING_POP	f	SNP										C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs50469250					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61833644	NES17763591	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:67598657 () rs orientation: forward

Symbol	Name	Function Class
Gm38307	predicted gene, 38307	1120 bp upstream
Rr388629	regulatory region 388629	within coordinates
Rr482020	regulatory region 482020	393 bp proximal
Rr482021	regulatory region 482021	1035 bp proximal
Tssr120253	transcription start site region 120253	709 bp upstream
Tssr123102	transcription start site region 123102	1053 bp downstream
Zfp874a	zinc finger protein 874a	within coordinates