rs50469757 SNP Detail

Summary

• ID
  rs50469757
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:28312717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTCAGAT TTATTCTGTC
  ACAGAGACTA AGCTAGGAGC TGTGGTGACA GGAGAGTATA GAGCCAGGCC TCTGGTCTTT
  CAGTCCCCAG AAGCCTTTAC TTGGAGGAAG GTAGCCTGGA AAACAGTCAC TTTCTGAGGT
  TGTTACTTCA CAGGCACAAG CCTCAGTGTG TGTTATTGAG GACTCTTATC TCCACGTCAG
  M
  TCATCTCTGC TTCTGTTTTT CACCAGCCTC AGTCATCCTC GTCCCATCTG GAAATTTGCA
  CATGTTTCTT CTTTCTTCAC ATTTCCAATA ACTCTTCCTA TCTCAAGCCA CCTTTCCTGA
  GTTAATGCAA CAATAGCCTC ACCCTCACTT CCTGATAAGA AATCAGACCA ACAGGTGTCT
  GAGAAGATCT GAGGAGGATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136237819	ENSMUSSNP3199441	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50469757					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:28312717 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21517	CpG island 21517	1433 bp proximal
Opcml	opioid binding protein/cell adhesion molecule-like	within coordinates
Rr206121	regulatory region 206121	1483 bp proximal
Tssr84179	transcription start site region 84179	1874 bp upstream