rs50470297 SNP Detail

Summary

• ID
  rs50470297
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46501790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGCTGCA CCAGCTGCTG
  GATGAAGACT TGCGGCAGAC AGTGGAGGTC CTGGACAAGG CGCAAGCCAA GTTCTGCAGC
  GAGAACGCGG CGCAGGCGCT GCACCTTGGG GAGCGCATGC AGGAGGCCAA GAAGCTGCTG
  GGCTCCCTGC AGCGTCTCTT CGACAAGACA GAGGACGTCG GCTTCATGAA GGTGGGACTG
  R
  AGCCCTGCTC CCAACTGCTT CTAGCCCAGG ACGCTCACCT CCTTTGTCTT TGGAGCCAGC
  CTGCATGGGC TAGACTTTGT CCAACTGCTG TTCCTAGTTC TGTGACCTTG GGCAAGTCAC
  CGATGCTTCC TAAGCCTTGG TGACCAGTCC GCCATCCTTT ATCTGTTAGT CCACCAACTA
  TCCTTTTAGT CCACATTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss60312537	NES15816177	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs50470297					SNP	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312537	NES15816177	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46501790 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11005	CpG island 11005	1662 bp proximal
Trim8	tripartite motif-containing 8	within coordinates
Tssr156776	transcription start site region 156776	1265 bp upstream
Tssr156777	transcription start site region 156777	1971 bp upstream