rs50470840 SNP Detail

Summary

• ID
  rs50470840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163483322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTGTTTG CCTTTGGATG
  AAGATGTAAA ACTCTCAGCT CCTGCTGCAT CTAGCCTGCC TGGACACTGC CATGCTCCCA
  CCTTGATAGG AGACTGAACT TCTGAACCTG TAGGGGTAGA GAATGTGACC CACAGAAACA
  CAGCTTAATG ACAGATTGCT GTAATAACAA GAGGTTTTTA TTCCGATTCG TGGGGTCGCT
  Y
  AGCCTTGCAG GGAGAGTCAA CCCTGATTGT CCAAAATACA GCTATTTTAT ACTCTTTTGA
  AGGTGTTTAC ACAGCTATAT TATTATTGGC TAGTAAAGCA ACCGTATAAT TTATTTGTTT
  GTTTGTTTTT CTTTTTGGTT TTTTTGAGAC AGGGCTTCTC TGTATAGCCC TGGCTGTCCT
  GGAACTGACT TTGTAGACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss148207640	ENSMUSSNP2954073	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs50470840					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163483322 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397465	regulatory region 397465			1255 bp upstream
Rr569443	regulatory region 569443			600 bp distal
Rr569444	regulatory region 569444			754 bp distal
Rr569445	regulatory region 569445			167 bp proximal
Serinc3	serine incorporator 3			Intron
				Noncoding-Transcript-Variant
Tssr27320	transcription start site region 27320			1901 bp downstream