rs50472106 SNP Detail

Summary

• ID
  rs50472106
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55207345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTGTCTTTC AGACCTACAT TCCTAAAGCT ACCCCGAGCA
  GCCCAGCTGT GGCAGAGTAT CTCGGGAACT AGCTTGGCTT AGCTGGAGCG GACTCACTCA
  Y
  TCTTTTTTCT ACCCCCAGGC CCGCCAGTGA TTTAGTTCCT GATCCTTCCA AAATCTGGTC
  CCCCTGTTGT CTGCTTTCTC TTGAGATGGC TTGCCACACC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52723003	NES15567959	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50472106					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52723003	NES15567959	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55207345 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	within coordinates
Myh7	myosin, heavy polypeptide 7, cardiac muscle, beta	796 bp downstream
Rr492380	regulatory region 492380	1083 bp distal
Rr492381	regulatory region 492381	within coordinates
Tssr125718	transcription start site region 125718	1205 bp downstream
Tssr125719	transcription start site region 125719	1113 bp downstream
Tssr125720	transcription start site region 125720	1088 bp downstream
Tssr125721	transcription start site region 125721	1076 bp downstream
Tssr125722	transcription start site region 125722	628 bp downstream
Tssr125723	transcription start site region 125723	586 bp downstream
Tssr125724	transcription start site region 125724	546 bp downstream
Tssr125725	transcription start site region 125725	279 bp upstream
Tssr125726	transcription start site region 125726	304 bp upstream
Tssr125727	transcription start site region 125727	337 bp upstream
Tssr125728	transcription start site region 125728	1145 bp upstream
Tssr128746	transcription start site region 128746	1913 bp upstream
Tssr128747	transcription start site region 128747	1889 bp upstream
Tssr128748	transcription start site region 128748	1845 bp upstream
Tssr128749	transcription start site region 128749	1814 bp upstream
Tssr128750	transcription start site region 128750	1792 bp upstream
Tssr128751	transcription start site region 128751	1786 bp upstream
Tssr128752	transcription start site region 128752	1727 bp upstream
Tssr128753	transcription start site region 128753	1528 bp upstream
Tssr128754	transcription start site region 128754	1458 bp upstream
Tssr128755	transcription start site region 128755	827 bp downstream
Tssr128756	transcription start site region 128756	844 bp downstream