rs50472490 SNP Detail

Summary

• ID
  rs50472490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60057377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAATGCA ATTGATGGGG
  AAATATGTCT GACACTTACA GTCAATTCAA AAGGTTTAGG CTAAATATAC ATGCATGGAA
  AGATTAATTC TATTTTTCAA AGAAGAGTGC ATATGGCATC TAACTTATGA AATAGATAAG
  CATAATTTTC ACAGAAAAAG ATTTCAGATG TAATAGTCAT GAGCCATCAT ATGTCGTAAA
  Y
  ATCAAACATG TAGTTAGCAT ATACCAAGGA GATTATCTAT ATATATAATA TATACATATA
  TCAAGAAAAC ATATTAAGCA TGTTGGCACA AGGAAGAAAC ACCCAAATGA AATAATCTAT
  GCTTGCCTTG CTGACAATTC AGAAGACCTC GTTGTAGTTA CAATGCCATC ATATCAAATT
  ACTCCCATTA GCTAAAGACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52560011	NES15632557	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	C	T	T	C
ss147991241	ENSMUSSNP5875448	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50472490					SNP	T	C	T	T	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52560011	NES15632557	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60057377 () rs orientation: forward

Symbol	Name	Function Class
Gm2682	predicted gene 2682	within coordinates
Gm41331	predicted gene, 41331	within coordinates
Rr390810	regulatory region 390810	1289 bp upstream
Rr502965	regulatory region 502965	1840 bp proximal
Tssr4605	transcription start site region 4605	1676 bp downstream
Tssr134460	transcription start site region 134460	1358 bp downstream
Tssr134461	transcription start site region 134461	1499 bp downstream
Tssr134462	transcription start site region 134462	1586 bp downstream
Tssr134463	transcription start site region 134463	1646 bp downstream
Tssr134464	transcription start site region 134464	1740 bp downstream
Tssr134465	transcription start site region 134465	1794 bp downstream
Tssr134466	transcription start site region 134466	1807 bp downstream
Tssr134467	transcription start site region 134467	1843 bp downstream
Tssr134468	transcription start site region 134468	1870 bp downstream
Tssr134469	transcription start site region 134469	1901 bp downstream