rs50473896 SNP Detail

Summary

• ID
  rs50473896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:35500893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAC ATGGCTGTTA GTGGCAGAGC
  Y
  AGTGTCTTTC CAATCAATTT CTGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148817648	ENSMUSSNP6736144	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50473896					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35500893 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18877	CpG island 18877	905 bp proximal
E130304I02Rik	RIKEN cDNA E130304I02 gene	1124 bp upstream
Gm73276	predicted gene, 73276	1464 bp downstream
Rr645475	regulatory region 645475	718 bp proximal
Rr645476	regulatory region 645476	1135 bp proximal
Rr645477	regulatory region 645477	1511 bp proximal
Tssr72060	transcription start site region 72060	1500 bp downstream
Zfp507	zinc finger protein 507	within coordinates