rs50475989 SNP Detail

Summary

• ID
  rs50475989
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126187914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCTTTCA CATCTGTCTC
  AGCTACTCGG AAGGCTACCC GGAAGACTGG GCTGGGGAAA CTATTTTCCC CTAAATTTCC
  CCAGTATGCT CACCTGCCAC CCAATGTGAG ATAAGACCAG CAAGTGTAAG TGTGCTTGCG
  TGTAAGATAG CACACTTCTG GGGTGGAAAC CAGCCCAAAG GAAAGAGGTT CAAGGGGCTG
  R
  GCAAGGGACA CCACTTGGAG TCCACGGCCA CCGGCAACAG ATCAGTTGCT TTGAGTTTCC
  AAAATGACGG CTCGGTATCA CAGCTCTGCA GGTTACTATG CTAACCTCCA TGCCAGAGTT
  GGGGAACGTT GCCCAGGAAC TCCAAGCACA TAGGAGTAGA GAGGGGTTCT GTGTGGCTGG
  AAGCTTCCCC CTCCCCCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145874698	ENSMUSSNP5946618	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50475989					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126187914 () rs orientation: forward

Symbol	Name	Function Class
Apobr	apolipoprotein B receptor	mRNA-UTR
Il27	interleukin 27	268 bp downstream
Tssr69041	transcription start site region 69041	653 bp upstream
Tssr74769	transcription start site region 74769	1205 bp upstream
Tssr74770	transcription start site region 74770	1171 bp upstream
Tssr74771	transcription start site region 74771	423 bp downstream
Tssr74772	transcription start site region 74772	496 bp downstream
Tssr74773	transcription start site region 74773	514 bp downstream
Tssr74774	transcription start site region 74774	557 bp downstream
Tssr74775	transcription start site region 74775	659 bp downstream
Tssr74776	transcription start site region 74776	666 bp downstream
Tssr74777	transcription start site region 74777	705 bp downstream
Tssr74778	transcription start site region 74778	1078 bp downstream
Tssr74779	transcription start site region 74779	1314 bp downstream
Tssr74780	transcription start site region 74780	1511 bp downstream