rs50477397 SNP Detail

Summary

• ID
  rs50477397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165664599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTATCCAC TTCATCTGTG GTTTGTTTCT AAGGGGACAG
  CCACCTGAGG TGGGCTGTCG TGGTGAGGCA CGTGTGGGTC TTGTAGACAT CTCATTCTGC
  Y
  CTCAGACAGA CAGGTCTTCG GAAGGAAAAA GGTGGGGAGG AAGGAAATGT GGGGATGAAG
  AGCTTGAGAG CGAGAGAAAG AGAAGAAGAG AGAGTAGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146008310	ENSMUSSNP6173230	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50477397					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165664599 () rs orientation: forward

Symbol	Name	Function Class
Cd247	CD247 antigen	within coordinates
Gm71096	predicted gene, 71096	within coordinates
Rr422479	regulatory region 422479	1966 bp distal
Rr422480	regulatory region 422480	within coordinates
Rr422481	regulatory region 422481	438 bp proximal
Tssr268	transcription start site region 268	1893 bp upstream
Tssr9850	transcription start site region 9850	1642 bp upstream
Tssr14797	transcription start site region 14797	525 bp upstream