rs50477772 SNP Detail

Summary

• ID
  rs50477772
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32520675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATCTTAGTA GGGACAGGAT ATATATTACA TAGCTTGTAC
  CAGAGCAGCC TCAAAAGGCC TGCACACTAC AGATGAACAT TAAAAATGCA TTCTGTTCGT
  G
  GTGAAAGTCA GTCAACATTT TTCAAGGCCC ACTACCTAAA GCCGTGTGGG AGGAACTAGG
  ATGAAAATGA GAAAATCTTT TCTTAAAGCT GTTGACAAA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148847911	ENSMUSSNP5031337	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss324311970	CHEV_13_32428561	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50477772					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32520675 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5422	CpG island 5422	1256 bp proximal
Gmds	GDP-mannose 4, 6-dehydratase	within coordinates
Tssr121995	transcription start site region 121995	1808 bp downstream
Tssr121996	transcription start site region 121996	1862 bp downstream
Tssr121997	transcription start site region 121997	1873 bp downstream