rs50478399 SNP Detail

Summary

• ID
  rs50478399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54814984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCG CTCGCGCCAC CGCCCGCCGG
  Y
  CCGGCCCGCC CCCCTGGCTC TCACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss139565756	ENSMUSSNP464761	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss324638266	CHEV_14_55196364	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50478399					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54814984 () rs orientation: forward

Symbol	Name	Function Class
Ajuba	ajuba LIM protein	within coordinates
Cpgi6463	CpG island 6463	within coordinates
Gm63340	predicted gene, 63340	68 bp upstream
Rr389677	regulatory region 389677	within coordinates
Rr404101	regulatory region 404101	628 bp upstream
Rr492273	regulatory region 492273	21 bp proximal
Rr492274	regulatory region 492274	134 bp proximal
Rr492275	regulatory region 492275	830 bp proximal
Tssr128601	transcription start site region 128601	1819 bp upstream
Tssr128602	transcription start site region 128602	29 bp upstream
Tssr128603	transcription start site region 128603	within coordinates
Tssr128604	transcription start site region 128604	16 bp downstream
Tssr128605	transcription start site region 128605	34 bp downstream
Tssr128606	transcription start site region 128606	51 bp downstream