rs50478442 SNP Detail

Summary

• ID
  rs50478442
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:78067125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGTGGTT TAGCCTGTAA
  CCCTAGTGTA GTACTCAAGT GGAGGCAGGA GTAATGCAAG TTTGAGGCCA GCCTGGGCTC
  CATAGCAAGT TCAAGTCCAG CTTGAACTAT AACAGGATTC TAACTCAAAA GAAAAAACAA
  AACAAAACAT GAAGAGGTTA GGAAAGTGAA GCCCTGGACT CAATCCCCAG CACCACAATC
  M
  CAACAATGAA ACAGCCTTAA AGAGAAAGAC CCATAAGCTA GGGGAGGCCA CTGTTGATCA
  GTCTGCACTC CAGAACAGAG AGGCACTACT GCTGGAGCAC CTATTCAATC ACTCAAGCTC
  CTGAATTACA GGACAAGTCC AGCCAAAACA CAGAGCCTGT ACCTTCTCCA TTCCATTGGT
  TCTCTTGGAA GCTGCTGGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147176910	ENSMUSSNP1668143	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50478442					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:78067125 () rs orientation: forward

Symbol	Name	Function Class
D10Mit139	DNA segment, Chr 10, Massachusetts Institute of Technology 139	1369 bp proximal
D10Mit139.1	DNA segment, Chr 10, Massachusetts Institute of Technology 139.1	1483 bp proximal
Trappc10	trafficking protein particle complex 10	within coordinates