rs50479366 SNP Detail

Summary

• ID
  rs50479366
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:73072688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGA CGCCGTCGCC ATAGGGACGG
  W
  CGGGGGCGGG GCCCGGCCGC GGGGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145171432	ENSMUSSNP4341	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50479366					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:73072688 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20584	CpG island 20584	within coordinates
Gm63983	predicted gene, 63983	985 bp upstream
Klf2	Kruppel-like transcription factor 2 (lung)	218 bp upstream
Rr382265	regulatory region 382265	1171 bp downstream
Rr400967	regulatory region 400967	within coordinates
Rr665300	regulatory region 665300	996 bp distal
Rr665301	regulatory region 665301	495 bp distal
Rr665302	regulatory region 665302	within coordinates
Tssr2606	transcription start site region 2606	56 bp downstream
Tssr77968	transcription start site region 77968	37 bp upstream
Tssr77969	transcription start site region 77969	49 bp upstream
Tssr77970	transcription start site region 77970	209 bp upstream
Tssr77971	transcription start site region 77971	689 bp upstream
Tssr77972	transcription start site region 77972	739 bp upstream
Tssr77973	transcription start site region 77973	776 bp upstream
Tssr77974	transcription start site region 77974	832 bp upstream
Tssr77975	transcription start site region 77975	982 bp upstream
Tssr77976	transcription start site region 77976	1221 bp upstream