rs50479623 SNP Detail

Summary

• ID
  rs50479623
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79312036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTGCTTT CAAATTAAAT
  TGTATCTAAA ACACAAAAAT GGCCGTGGCA GCCTGCAAAA ATGGGAAAAT AAATCTTTGA
  CATTTTAAAA GAAATTAGAA CTGATATTAA TCTTACCTGT CTCTGGGTTG TCTATCCTGT
  ACCAGGAAGG TAGATTATAG TCTTTTCTTT TTTTAGTCTT CAAATCAGAT CTATATGGAG
  S
  AGTAAGTAGA GAAATAATAG AAGTTTATTA GAGATGATGT AGATAAATGA AAGGTGCAAA
  CAGCCATAAT TTGAAATATT AAAATTAATA ATTTAATTAT TAATTAAATT AGTTTGAAAT
  ATTAAAATGT GATAAGAGGA TCAGATTATG GAATCCTTCA TTTTGAACTT AGATAACTTA
  GAGAAGTTAT TTGCCCAATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144772705	ENSMUSSNP4160166	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50479623					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79312036 () rs orientation: forward

Symbol	Name	Function Class
Gm70347	predicted gene, 70347	within coordinates
Rr413811	regulatory region 413811	1267 bp proximal
Tssr129	transcription start site region 129	710 bp upstream