rs50480173 SNP Detail

Summary

• ID
  rs50480173
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164508755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    atcataaag ccagaaaatg gcaaggctga
  ggtacagcgt ctaggctgac tctggaacac aaaggcttac cacaaatgca cAGACTAATG
  GACTTCTTAA CATCTGTTGG ACCCATTTCC TTCCCACTTT CCATCAATTA CCATCTAGAG
  Y
  TGAACACTGA TGACAATGTC ATTCCCAGTA GAAGACTTTC TGGATGATGG TCACCCACAG
  TAAATGCTTA TAAATAATCT AGAAAGTAAG TGAAGATACA ATTGTTATCA TACATAGATC
  TAGCAAACAA GTACCTGAGT TATTAATATT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60336403	NES15836008	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T	C		T	T	T		T
ss320086052	CHEV_1_166611317	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50480173					SNP	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60336403	NES15836008	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164508755 () rs orientation: forward

Symbol	Name	Function Class
Gm37184	predicted gene, 37184	748 bp upstream
Gm37853	predicted gene, 37853	within coordinates
Rr422252	regulatory region 422252	455 bp proximal