rs50480250 SNP Detail

Summary

• ID
  rs50480250
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:82271801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGACTACT ACACTTTTTA
  GATTAGAAGA AGGGATTAAG TAGGCAATTA CAAAACAAAA ACAACAAAAC AAAACAAAAG
  AGGAGGCACT TGATTCCCAT TTTCAAATGT ATCCACCAGA GTTCTGCAAG ATGGAGGCTT
  TTTAAGTGCT AAATTAGTCT CATGGAAGCT CTAGTAACTT TTCATGTCTC GATGATCCAG
  M
  AAGTGGTGGG AATTAGACTC AACTCCAAAC AATAGCTTTA AAATCTTATG TATCATCCAT
  TCTCAGGCCT CATTCCTAAT GGTCGCCAAC AGTAATGTTC TCCTTTCTGA AGGTTTTAGG
  CTGAGGACAG CAACTGACAT AAAGCAAAGA CCAAATAATC TGAAACTTTG GTTGTCGTTT
  GTATTCATTA CTATTTTTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61190085	NES16699808	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs50480250					SNP	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61190085	NES16699808	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:82271801 () rs orientation: forward

Symbol	Name	Function Class
1700031L13Rik	RIKEN cDNA 1700031L13 gene	Intron
Tssr51487	transcription start site region 51487	607 bp upstream
Tssr51488	transcription start site region 51488	581 bp upstream
Tssr51489	transcription start site region 51489	693 bp downstream
Tssr51490	transcription start site region 51490	707 bp downstream
Tssr51491	transcription start site region 51491	737 bp downstream
Tssr51492	transcription start site region 51492	748 bp downstream
Tssr51493	transcription start site region 51493	774 bp downstream