rs50481303 SNP Detail

Summary

• ID
  rs50481303
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129059656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG TCAATGCAGT CGACTGTGAG
  Y
  GGTTACTGGG AAACTTCTGC AGGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss144458566	ENSMUSSNP2822320	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321689224	CHEV_5_129488467	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50481303					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129059656 () rs orientation: forward

Symbol	Name	Function Class
Rr109750	regulatory region 109750	456 bp distal
Rr127045	regulatory region 127045	456 bp distal
Rr127046	regulatory region 127046	146 bp proximal
Stx2	syntaxin 2	1965 bp downstream