rs50482489 SNP Detail

Summary

• ID
  rs50482489
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116104610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATATCTG TGGTTTTGCG
  TGCGGGAGAC ACTGTGCAGT TGCTTCTATG TGAGGCTCAC TTGTTCTCCC TCAGCTCCTT
  AAAGGGAGCT ATCACTGCAT TACAGGATAC TGTCTCTTCA TTGTTATCTT CAGGCTTTCC
  ACCCAAGACA CTGCTTGCCA GGATGAACCA ACCTTGACCC CAGTGTTCAT CAAAAGCCAT
  S
  ATTTGGTCAT TTGATATAGA AACTGAACCC ATTTTCTCCT AAGCGTGTAC ATGTATATGG
  TATGGTAGGG TGTGGTATGG CATGTGTGTG TGTGTATGTG TGTGTGTGTG TGTTGTGCGT
  ACATGTGTTA TATGTTGTAT ATGTGTATGT GCACATGTAT TTGTGTATAT GAGTGTGTGT
  ATGCATTTGT TTGTGTGCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60437532	NES15945928	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50482489					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437532	NES15945928	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116104610 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdc14a	CDC14 cell division cycle 14A			Intron
				Noncoding-Transcript-Variant
Rr583690	regulatory region 583690			228 bp proximal