rs50482798 SNP Detail

Summary

• ID
  rs50482798
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134431672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGT AGCACGATGC TGTCTGTCTC
  C
  AAGGGATCGT GGGTGGGAAG CAGGT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145506788	ENSMUSSNP836991	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss319982789	CHEV_1_136400511	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50482798					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134431672 () rs orientation: forward

Symbol	Name	Function Class
Gm25612	predicted gene, 25612	1404 bp upstream
Gm70637	predicted gene, 70637	1834 bp downstream
Rabif	RAB interacting factor	within coordinates