rs50483323 SNP Detail

Summary

• ID
  rs50483323
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21425357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGGTC CTGGCTGTCC
  TGGAACTCAC TCTGTAGACC AGGCTGGCTT CACTGTGCTA ATTTTTAAAA AACTCCTGAT
  CCACTTTATC ATAACAAGTT TTCAGGATAA GTCCCAATTT TAAGTAGTCT TCAACATTCA
  CAAGTCAGTA TTCAAATTAA GATTCCAATT TGAAATTCAT CTTTGATTTG ACAATAGTCC
  R
  TATCTTTAGG ATAAAATAAC TCCACCTGGG GGAGATGAAG AGCCAGAGGA ACATCTCAGA
  GGGCCATGCT GGATAAAAGC CTGCAGGGCA GAACTGGCAC CTACAGCTTG GTGGTGACCC
  ATGCCTGCCA TCCCAGCACT AGGAGGCTGA CACAGAACAA CAGCCAGGGC TATGTTAAAT
  CAAGAGTCCC AAAACTGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52314517	NES15371706	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50483323					SNP	A	G	G	G	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52314517	NES15371706	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21425357 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	1724 bp upstream
Cpgi4477	CpG island 4477	1149 bp distal
Gm49586	predicted gene, 49586	1010 bp downstream
Rr463712	regulatory region 463712	1917 bp distal
Rr463713	regulatory region 463713	1673 bp distal
Rr463714	regulatory region 463714	1792 bp distal
Rr463715	regulatory region 463715	632 bp distal
Rr463716	regulatory region 463716	1612 bp distal
Rr463717	regulatory region 463717	1124 bp distal
Tssr112932	transcription start site region 112932	1577 bp downstream
Tssr112933	transcription start site region 112933	1099 bp downstream
Tssr115856	transcription start site region 115856	1864 bp upstream
Tssr115857	transcription start site region 115857	1838 bp upstream
Tssr115858	transcription start site region 115858	1810 bp upstream
Tssr115859	transcription start site region 115859	1764 bp upstream
Tssr115860	transcription start site region 115860	1739 bp upstream