rs50486091 SNP Detail

Summary

• ID
  rs50486091
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85417462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTC AAGGTTCCAG GAGAGAAGGA
  S
  TCAGAGAAAA TAGCTGTGGA CTTGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss60644222	NES16269467	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G	C	G	G	G		C	G	G
ss145392130	ENSMUSSNP5663833	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss322751357	CHEV_8_87214732	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs50486091					SNP	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60644222	NES16269467	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85417462 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20706	CpG island 20706	784 bp distal
Rr666576	regulatory region 666576	1359 bp distal
Rr666577	regulatory region 666577	1590 bp distal
Rr666578	regulatory region 666578	1020 bp distal
Trmt1	tRNA methyltransferase 1	within coordinates
Tssr78430	transcription start site region 78430	1530 bp downstream
Tssr78431	transcription start site region 78431	1515 bp downstream