rs50486109 SNP Detail

Summary

• ID
  rs50486109
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112573606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCATGAA GATGATCTTA
  AGAGCTTTAA AAAATGCTCG CTGTATGTCC TGGTATGAGT AGACATTTAT TTGAATTCCT
  ATATTTAAAA ACATTTCTAA TTAAGTTCAG CCAAGGTCTC CTCTTTTTTG CAGTCCTAAG
  GATCCAATTC AAATCCTCAT TCATGATAGG TAAATTCTTC AGCATTACTT TGTAACACTT
  S
  AAATAGTAAT AGCAATAGCA ACAGTAATGA TATTTATTGA GTATGTGCCA GGAACTGGGT
  TGAGTGTTTT ACAAATATAA GTTTAAACCT CACAATACCT TGCAAGCTAT TAATGACCTT
  TACCTTAGTC CATTTGTGTT GCTATAACGA ATTGCCCGAG GCTAAGCTAT AAATAATAGA
  GTTGTGCTGA ACTCAAGGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52696251	NES15540352	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50486109					SNP	G	G	G	G	G	G	C	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52696251	NES15540352	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112573606 () rs orientation: forward

Symbol	Name	Function Class
Gm48876	predicted gene, 48876	within coordinates
Gm59893	predicted gene, 59893	1756 bp downstream
Rr395952	regulatory region 395952	1125 bp upstream
Rr486369	regulatory region 486369	1122 bp distal
Rr486370	regulatory region 486370	861 bp proximal
Rr486371	regulatory region 486371	961 bp proximal
Rr486372	regulatory region 486372	1803 bp proximal
Tssr121117	transcription start site region 121117	1076 bp upstream
Tssr121118	transcription start site region 121118	1155 bp upstream
Tssr124051	transcription start site region 124051	967 bp downstream