rs50489189 SNP Detail

Summary

• ID
  rs50489189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27208509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGTGTGGT GGATCTGGAA GGTTAATGGG GACCATAGTC
  CTCAAGCTTG CTGCACAGTG AAAGAAACGG TATGGTGGCA GCAGTACCCC AACAGATGTG
  Y
  GGCTTAGTTT CCATATCAAG AACCTAGGAT TTGATTATGG GACGAGAATC TAAGCTTTGA
  GATTATCCAG CTATCTAACT GTTGATGCTG ATTTATCATC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss52338325	NES15368968	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs50489189					SNP	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52338325	NES15368968	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27208509 () rs orientation: forward

Symbol	Name	Function Class
Silc1	sciatic injury induced lincRNA upregulator of SOX11	within coordinates
Tssr115957	transcription start site region 115957	1937 bp downstream
Tssr115958	transcription start site region 115958	1967 bp downstream
Tssr115959	transcription start site region 115959	1988 bp downstream