rs50489526 SNP Detail

Summary

• ID
  rs50489526
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:63404081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGTTTC ATTTTACTGC
  CATTTCTAAT AAAATATATT AGTGAAAACT ACTATTTACT GATCAGCATA TACGTAAAAT
  TCAGTCTAGC ACATTAACAA CCTGTAGAGT TTCAATGAGA TAAAGCAATA CATTCAAAGA
  TAATTTAAAA GTCACCATCT CCTTTAAAAT GTGGAAAGAC AAGATTTCAC AGGAAAAAAA
  R
  CTGAACAGCT GTTCTCTTTT GAGACAGTCT TCCTCTTGTA GCCCAGACAG TCCTAGAACT
  CACGGCAATT CTCCTGTCTC AGCCTCCTCA CTGCTCAAGT TACAGCTGTG ATCTACCACA
  CCCAAGGTGA GCAGCTCTTT GCAAAGCTCA CTGTTACCAT GCCCCACAAA TTGCTTCGCA
  GCATTTCTCA ACTTATGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss139623578	ENSMUSSNP4196308	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50489526					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:63404081 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6599	CpG island 6599	1618 bp distal
Fdft1	farnesyl diphosphate farnesyl transferase 1	within coordinates
Gm53861	predicted gene, 53861	within coordinates
Gm62779	predicted gene, 62779	1674 bp upstream
Rr297363	regulatory region 297363	1080 bp distal
Tssr129158	transcription start site region 129158	1947 bp upstream
Tssr129159	transcription start site region 129159	1691 bp upstream
Tssr129160	transcription start site region 129160	1670 bp upstream
Tssr129161	transcription start site region 129161	1652 bp upstream