rs50489648 SNP Detail

Summary

• ID
  rs50489648
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170794302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTTTGG GATAGAGAAA
  TTACTACTGT AGTGATGATA CCTCACGGAT TTTTCATTAT GGAAGAACGA GATCCTGTTC
  AGTAGTTTGT TCCTCCAGCT ATGGCACCTT AGCGTGATGG TTTCCCCTTC CAGAAACACC
  AGCTGAGGGG TCTGGAGCAG CAGCCAGTCT GAAAGACACG AAAGGACCAT AGCACTCAGA
  R
  GGTCAGGTCG CTCTTCCTAG TGGGATGCGA TATGCTAAGG GGGAGAGCTT TAGTTTGACG
  TCAGGCAGTC GATCTCTGTT TCTAGCTCCA CTCATTTGGG AGCTCTTCAA TTTGGGGCAA
  GAAAGTTAAG GCTTCTGGGC CTCACTTTCT TCATCTGTGA AAATAGACAT GATCAGATTT
  CACAGCGACA GTAGTTCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60345267	NES15845091	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50489648					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60345267	NES15845091	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170794302 () rs orientation: forward

Symbol	Name	Function Class
D1Mit147	DNA segment, Chr 1, Massachusetts Institute of Technology 147	1656 bp distal
Fcgr2b	Fc receptor, IgG, low affinity IIb	within coordinates
Rr20521	regulatory region 20521	1099 bp proximal
Rr372438	regulatory region 372438	250 bp upstream
Tssr14956	transcription start site region 14956	922 bp upstream
Tssr14957	transcription start site region 14957	210 bp upstream
Tssr14958	transcription start site region 14958	1471 bp downstream