rs50489667 SNP Detail

Summary

• ID
  rs50489667
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:101439093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAT GCACATGTGG AGGCTTAGAG
  R
  TTGCTGTCAG ATGTCTTTCT AAATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	MSM/Ms	SM/J
ss146736179	ENSMUSSNP5903311	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss324798535	CHEV_14_101600874	CHEVERUD	SCREENING_POP	f	SNP		A		A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	MSM/Ms	SM/J
rs50489667					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:101439093 () rs orientation: forward

Symbol	Name	Function Class
Prr30	proline rich 30	1327 bp upstream
Tssr130025	transcription start site region 130025	1334 bp upstream
Tssr130026	transcription start site region 130026	1239 bp upstream