rs50489719 SNP Detail

Summary

• ID
  rs50489719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:30529094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAG ATTCTTCCTT GTCTCCTGTG
  Y
  CACCCTAACC CTGGCTTTCT ACACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	LG/J	MOLF/EiJ	MSM/Ms	PWD/PhJ	SM/J	WSB/EiJ
ss52363813	NES15389160	PERLEGEN	MM_PANEL2	f	SNP	C			C		T		T		C
ss137553644	ENSMUSSNP4857515	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				T
ss323988644	CHEV_12_31163960	CHEVERUD	SCREENING_POP	f	SNP					C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	LG/J	MOLF/EiJ	MSM/Ms	PWD/PhJ	SM/J	WSB/EiJ
rs50489719					SNP	C	C	C	C	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52363813	NES15389160	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:30529094 () rs orientation: forward

Symbol	Name	Function Class
Gm28806	predicted gene 28806	107 bp downstream
Tssr113087	transcription start site region 113087	23 bp downstream