rs50489855 SNP Detail

Summary

• ID
  rs50489855
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144555356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTAGACCAG GCTGGCCTCG AACTCAGAAA TTCGCCTGCC
  TCTGCCTCCC AAGTGCTGGG ATTAAAGGTG TGTGCTACCA CTGCCCAGCT TCTCTTGCAG
  K
  TTTCTATACA CTTCCTCTGT TCTGCTTATT TAATGTTCTA ACCGTGATTT GCCATGGGGA
  TTTTCTTTTC TGGTATTGTC TATTTGTTCA GTGAGCTTT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147805115	ENSMUSSNP3670901	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50489855					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144555356 () rs orientation: forward

Symbol	Name	Function Class
Dtd1	D-tyrosyl-tRNA deacylase 1	within coordinates
Rr374001	regulatory region 374001	1315 bp upstream
Tssr20549	transcription start site region 20549	1347 bp upstream
Tssr20550	transcription start site region 20550	1409 bp upstream
Tssr26613	transcription start site region 26613	1122 bp downstream