rs50490618 SNP Detail

Summary

• ID
  rs50490618
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:170672593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAT TAAAGGCGTG CGCCACCACG
  Y
  CCAGCTTATT ATTTTAAGAG CAGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss146145953	ENSMUSSNP2473382	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320113904	CHEV_1_172775155	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50490618					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170672593 () rs orientation: forward

Symbol	Name	Function Class
Atf6	activating transcription factor 6	Intron
Rr423131	regulatory region 423131	345 bp distal
Rr423132	regulatory region 423132	442 bp distal
Rr423133	regulatory region 423133	393 bp proximal
Tssr14928	transcription start site region 14928	763 bp downstream