rs50491077 SNP Detail

Summary

• ID
  rs50491077
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:140426522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAAAGAA CTACATCCCA
  CCTAGGCAGT ACATGTGCAC ACAGCCCCTC CCCAGGGTGC TAGGAGAGGT GGGTCACCAT
  GCTCAGGAGT CTGTCTCCTC CACTGGTGTG CACAGCACTG TCTGCCGCTG GGACTGGGGG
  ATCCGGTTGT TGGTTACCAG GTCTCCTGGT CCCCACACAT CTCTCTTTCA GGTGCAAGTG
  Y
  TAGATGCTCA AGAGGACACA TAAGCAGACC CGAAACACGG CTTGACTTCC ATGAGCGACA
  GGACCAGCCC TACAGCGACC ATGGATGTGC CGCGATCACT GCTTCTTCAC GAATAAATTC
  ACCCTCGAAC TGTTAAATCA ATAAAGCCTA CTGCAGCCCA TGTGCTGGCT TCTCTCTCTC
  CCTGCAACAC AGGGACACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61072234	NES16047744	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50491077					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61072234	NES16047744	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140426522 () rs orientation: forward

Symbol	Name	Function Class
C330022C24Rik	RIKEN cDNA C330022C24 gene	920 bp upstream
Cimap1a	ciliary microtubule associated protein 1A	1307 bp upstream
Gm45785	predicted gene 45785	Intron
Rr400701	regulatory region 400701	1470 bp downstream
Rr657754	regulatory region 657754	1593 bp distal
Rr657755	regulatory region 657755	1052 bp distal
Rr657756	regulatory region 657756	1191 bp distal
Rr657757	regulatory region 657757	830 bp distal
Rr657758	regulatory region 657758	656 bp distal
Rr657759	regulatory region 657759	1306 bp proximal
Scgb1c1	secretoglobin, family 1C, member 1	Coding-Synonymous
Tssr69847	transcription start site region 69847	1042 bp downstream
Tssr69848	transcription start site region 69848	1145 bp upstream
Tssr69849	transcription start site region 69849	1161 bp upstream
Tssr69850	transcription start site region 69850	1175 bp upstream
Tssr69851	transcription start site region 69851	1192 bp upstream
Tssr69852	transcription start site region 69852	1207 bp upstream
Tssr69853	transcription start site region 69853	1234 bp upstream