rs50491517 SNP Detail

Summary

• ID
  rs50491517
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6878451 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGAGG TTAAAACACT AAACTCCGCC
  R
  GGACTTTTGA TAGTCACCAG AAGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60526279	NES16538658	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G	G	A	A	A	A	G
ss145090501	ENSMUSSNP4496457	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50491517					SNP	A	A	G	G	G	A	G	?	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60526279	NES16538658	PERLEGEN	MM_PANEL	f	SNP	A/G
ss145092630	ENSMUSSNP6786904	ENSEMBL	ENSEMBL_Sanger	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6878451 () rs orientation: reverse

Symbol	Name	Function Class
Dynlt1c	dynein light chain Tctex-type 1C	1373 bp downstream
Tmem181c-ps	transmembrane protein 181C, pseudogene	within coordinates