rs50495039 SNP Detail

Summary

• ID
  rs50495039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161402919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAGTTGA AACTCATTGA
  CAGGTTGATA GGAAAAGCAT GCTAAGACAG GACTGTGAAA GCTGAGAGCA TCCTAAAGAC
  ACTGGCACAT CTCTGCTTGA TCAGCGTTAG GCTTCGTTCT CCATGTCACT AATCCCAACC
  CAAAAGAGAA GGCGTGTTCC TGAGGAATTT GCTCGGAGGC TTGTTTCCCA CAGATCATCA
  Y
  AGAAAATCTT TTGGTACTTG CAGCAACCAG AGATGAGTCA CCAATCCTGC TTGGTTCAGG
  ATTTGGGTAA GGAGAAGGTT GAGACGCAAG CTTTTGCTTC AGCAGCCTAA AGTAAGCTTT
  CAAATGAGAC CAAGAATAGA GCTGAGCCTA ATCTGCTTTT TCTGTTAGTT TATGTTTATA
  TTTTCTGTTA GTGGAAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60336179	NES15834517	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50495039					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60336179	NES15834517	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161402919 () rs orientation: forward

Symbol	Name	Function Class
Gm31815	predicted gene, 31815	within coordinates
Rr421814	regulatory region 421814	583 bp proximal