rs50495226 SNP Detail

Summary

• ID
  rs50495226
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104695019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGGGAC ACTAGGGTGG
  CCTCAAACTC ATAGAGATCC TCCTGCTTTG GTCTCTCAAG AGCTGGGATT AAAGGCATGC
  ACCACCACTG CTGGGCTAGA CTATACGTTA TCTGAAGGCA GAGTTTCATG GTTAGTACAT
  AGTTTTCAGT TCACATTCAA CCAATGTTTA CTGAATGAAT TCAGAGGCCT GGTGGACAAA
  R
  CACCCTTCAC CTCAGTTATA TGATTTATCA AATGTATGGT CCATGCTTCC AATCCTGAGT
  GAGTGTCTAC GTATGTTGTC TGCCTGGATT TGAGACAGCT TCACTCCACA GCCTATGTTG
  GCCTGGAATT TGTGGTAACT CTGCCCCCTC GGGAGTGCTG AGATGACAGG CATGAACCAC
  CCGGCCAGCT GCACCTGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135571323	ENSMUSSNP3830835	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50495226					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104695019 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13651	CpG island 13651	841 bp proximal
Gm66976	predicted gene, 66976	606 bp downstream
Ppm1j	protein phosphatase 1J	1685 bp downstream
Rhoc	ras homolog family member C	1331 bp upstream
Rr77009	regulatory region 77009	581 bp proximal
Tssr31056	transcription start site region 31056	869 bp upstream
Tssr31057	transcription start site region 31057	1090 bp upstream
Tssr31058	transcription start site region 31058	1139 bp upstream
Tssr31059	transcription start site region 31059	1323 bp upstream