rs50495629 SNP Detail

Summary

• ID
  rs50495629
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55658204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAAGACTA CACAGAGAGA
  CCCTGCCTCA AAAAACTAGT AAAATTAATT AATTAGATAA AATCAGGGGA AGCAAAACAA
  GACTCTGGGG TGCCAGGCAT GGTATACGTG TGATGCTAAC ACTCAGGCAG GCTAGGCAGA
  AGGACTGGCA GCTCAAGGCA AGATGCCCCC TCATTCCGTG GCTGTTTGGG GTCTGTATGT
  S
  CCCTCTCACC TTTGTTTCAC TCCAAAGAGC CCCTAATAAT GGGGACGGGG AAGTGACACT
  GTAAAAGGGA AATGACCTAG TCACAGGCAT GGTGAGTCAG CACATGGAGA CCTGGGTTAG
  CCACTCCTTC CTATACAGGC TGCTTCCTGA GAGGTGTGGG GCAAGACCAA GGTGGGGGGT
  CCTGGGAGGA GGAGCCACTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss149037247	ENSMUSSNP3113801	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50495629					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55658204 () rs orientation: forward

Symbol	Name	Function Class
Pdlim7	PDZ and LIM domain 7	within coordinates
Rr281453	regulatory region 281453	within coordinates
Tssr122709	transcription start site region 122709	1948 bp downstream
Tssr122710	transcription start site region 122710	1966 bp downstream