rs50496469 SNP Detail

Summary

• ID
  rs50496469
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164267196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTCAATCT GAGACAACTT AGATCTGTTT GAAGTGAGCA
  CTACAAACGA GCTGTGGCAC AGCCTACTAC TGTAGCTAAC ACAGCGCCAG CCTACTGTAA
  M
  CCTGACTAGG GACAATGAGA AGCTAACTGG GTGCCTGCTA AGATGGCAGT CACCACATGG
  AGTGTCCAGT GCACCTCTAG TGCAAGAGCT GGACTTGTA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145978635	ENSMUSSNP3139636	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50496469					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164267196 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Rr13721	regulatory region 13721	996 bp distal
Rr20253	regulatory region 20253	5 bp proximal
Rr25446	regulatory region 25446	1207 bp distal
Rr25447	regulatory region 25447	711 bp distal
Rr25448	regulatory region 25448	236 bp distal
Rr31656	regulatory region 31656	405 bp proximal
Tssr9784	transcription start site region 9784	1120 bp downstream
Tssr14732	transcription start site region 14732	1867 bp upstream
Tssr14733	transcription start site region 14733	1768 bp upstream
Tssr14734	transcription start site region 14734	1723 bp upstream
Tssr14735	transcription start site region 14735	1669 bp upstream
Tssr14736	transcription start site region 14736	1628 bp upstream
Tssr14737	transcription start site region 14737	1568 bp upstream
Tssr14738	transcription start site region 14738	1432 bp upstream
Tssr14739	transcription start site region 14739	1248 bp upstream
Tssr14740	transcription start site region 14740	1207 bp upstream
Tssr14741	transcription start site region 14741	1130 bp upstream
Tssr14742	transcription start site region 14742	1088 bp upstream
Tssr14743	transcription start site region 14743	1931 bp downstream
Tssr14744	transcription start site region 14744	1980 bp downstream