rs50496681 SNP Detail

Summary

• ID
  rs50496681
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:75650135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCAAGT AGCTGGGATT
  ATGGATGTGG TCATCATGGC CAGCAAGAAT TATATTTTTA TGTGTATGAC AAATAGATTG
  ATTTGAAGTT AGTTTTGACT GAAATCCTTT CCCCAATGTC TAGTTCTCTA AAGCAGGAAT
  ATCTATGGGA GAGTTTTTTT ATGCTTTTGG CAAACAGCAG TTTCTCAGCC CCAGAAGCAC
  Y
  GACAGGGAAG AACAGATGAG ACTCATCACC TCCCATTCCT TTGAGCATCT TTAAACAGTT
  AATGTTTCTT AGGAGGGGTG CATCATTTTC TTCACTGAGA AAGGCACTGA TAAGTTATCC
  ATGCTCTAGT AAGTAAACTC TTACCCACAC TCACTTGAGA AACTCAAATC AAACTCCATG
  TGCCCTGTAC ACACAAAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135330171	ENSMUSSNP3335763	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50496681					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75650135 () rs orientation: forward

Symbol	Name	Function Class
Rr397722	regulatory region 397722	622 bp upstream
Rr578362	regulatory region 578362	1169 bp proximal