rs50498479 SNP Detail

Summary

• ID
  rs50498479
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52473146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTGGCT TCCAAATCAG
  TGATTTAAAA GTCAACTGGA AAAGCGAATG CTGTGATTTT GCCTGGCCAC GTTGACATCT
  GAGTTGATTT TGGGACTTAC TGAAAGCATT TTATGGGGCC AGATTCTTTT CCCCTCTTGG
  TAACAGTCTC CTCGTGTCCT TGTTTGCCAC CACGTAGCTG TCTTGGGCCC TGCTAATTTT
  R
  GCTTATTGAG TGTAGTTATT GAGACTTCTT GGTGGAAGCA TTCTAGCTTT GTGGTTGGCC
  TGGAGCTTAA GGGCAAAGCT GAGGAAAGTA CATTTTTCAT GAATGATTAA TTAAGGGCCC
  AGCATTTACT TATCTCTTGA CGCCTTGAAA TTCGTCCTGT CTCAATTGTC TTGGTCCAGT
  GACCTTTGAC TGTAGCTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60409018	NES15911268	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50498479					SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60409018	NES15911268	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52473146 () rs orientation: forward

Symbol	Name	Function Class
D3Mit364	DNA Segment, Chr 3, Massachusetts Institute of Technology-364	486 bp proximal
Rr576544	regulatory region 576544	1736 bp proximal