rs50498653 SNP Detail

Summary

• ID
  rs50498653
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127290366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCACCTGAT AAAGAATGAA
  GGACACAAAG AAACGTGTCC CGGAAACTGT GACACAGTTA CAACACAGTG TGACTGGAAC
  ATACAACAGC TCATCATGTA GCTGGATGAT CCAGCTATAT CTTCTGTTTT GCTGTTTCTA
  ATTTCTTGAG AATCACTTGC AAACAAACAG AGGAGATTCT ACTCTGCAGC CAGAGGTTTC
  W
  GTTCTACCTG ACTTCAGATA AAGGGCAATG ACCAATCTGG GCAACCCATT TCTACATCCT
  ATGCAAATTA ATGCACCAAT CACCAAAGAA GAGTACTGGA AGGTCAAAAA AACCGAAACC
  CTGCACAGAG GACATCATGG TAACTTCCGA TGTTACAGCA TTATGTCATT TTGCACAGCT
  CCTAATGAGG TCTTCTCAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135865047	ENSMUSSNP369392	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
ss320954671	CHEV_3_127199635	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50498653					SNP	T	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127290366 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13791	CpG island 13791	1615 bp proximal