rs50499228 SNP Detail

Summary

• ID
  rs50499228
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:80565547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCAGCTG TTAAACTATC
  AGGAAGCCTC AGACTACTTG AAAGACACAA CACAGGAGGC AGAGTCCCTT TTTCTGAAGA
  TTACAAAAAC TCGCCTGTTC CTTAAATAGA AATAGCAGAT TTATGTGAAG CCACTGATCA
  AAACCTCCTT GAGCATGAGC TCCAGGAACA CCCTGTGTCA ACACGGTGAA AACACCCTGC
  R
  GATGCCTCAG GATCAAAGTC CCCTTTCACA GCCACGCTTC CCAGAATGAC CCAGATCCCC
  TATTCCATGC CGTCCTACCT GTTAGGTTAT ACAGGTGGAA ATTGAGAGTA ATGTAATCCA
  CCTCAGCACA CAGAACAGAG CCAACTTTCA TTCCTCCAAA GAATACAGCT TGTGTTTTGT
  TTAAAGGTGA GATTCTAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss136688870	ENSMUSSNP1541771	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G		A
ss323024902	CHEV_9_80577101	CHEVERUD	SCREENING_POP	f	SNP				A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs50499228					SNP	G	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:80565547 () rs orientation: forward

Symbol	Name	Function Class
Rr683772	regulatory region 683772	1246 bp distal
Rr683773	regulatory region 683773	within coordinates
Tssr86335	transcription start site region 86335	1581 bp downstream