rs50499488 SNP Detail

Summary

• ID
  rs50499488
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10611133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTTTAAT AGGGGCCAAT
  GTAAAGAAAA GGGGCAGGAT CCAATATCCA TTCTCTTTTA CTTCAAGCTA CACTAGAGCA
  CACAAGGATT CACCCTTTTT AACCAGTGCT TTGTACCTGA GAGCTAAGAA CCTAAACAAA
  ACTTTGGGGT TCTACTAAGT TTAGTGAAGG TGATATTGGG ACTGGCATTT AGGAACATCC
  R
  AAGAAAGAGC CAAAAGTAGT TTTCATTTTC CTGAGACAGA GTTTGATGTA ACCTAGGCTG
  CCTTTTCCAT TTCTATGTAG TTTAGAATGA CCTTGTCTTT CATCCTCCTG TCTCCACTTC
  CCAAGTTCTG AGCCTCCATA CCCAGGCTCC CGATTTATGC TTTAATGGCA TATAGGAAAT
  GGCCCAACTA AAGTTTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146607086	ENSMUSSNP7023347	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss325524298	CHEV_18_10611131	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50499488					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10611133 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	485 bp distal
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	781 bp upstream
Rr533778	regulatory region 533778	1035 bp distal
Rr533779	regulatory region 533779	1357 bp distal
Rr533780	regulatory region 533780	291 bp distal
Rr533781	regulatory region 533781	997 bp distal
Rr533782	regulatory region 533782	691 bp distal
Tssr152429	transcription start site region 152429	1017 bp upstream
Tssr152430	transcription start site region 152430	989 bp upstream
Tssr152431	transcription start site region 152431	845 bp upstream
Tssr152432	transcription start site region 152432	821 bp upstream
Tssr152433	transcription start site region 152433	770 bp upstream